پیوندهای مفید
اخبار و اعلانات
آمار
| تعداد نشریات | 31 |
| تعداد شمارهها | 834 |
| تعداد مقالات | 8,015 |
| تعداد مشاهده مقاله | 14,852,499 |
| تعداد دریافت فایل اصل مقاله | 9,586,520 |
Study of Genetic Variation in Three Species of Hypnea J.V. Lamouroux (Cystocloniaceae, Gigartinales) Species Using ISSR Markers | ||
| Journal of Epigenetics | ||
| مقاله 7، دوره 1، شماره 1، اردیبهشت 2019، صفحه 43-48 اصل مقاله (664.24 K) | ||
| نوع مقاله: Original Article | ||
| شناسه دیجیتال (DOI): 10.22111/jep.2019.28729.1011 | ||
| نویسنده | ||
| Fatemeh Sargazi* | ||
| Department of Biology, University of Sistan and Baluchestan, Zahedan, Iran | ||
| چکیده | ||
| Hypnea species were found in southern coasts of Iran. This genus is an important red alga which comprises about 53 species world-wide and has a wide geographical distribution on the tropical shores around the world. In Iran, about 10 species of this genus has been reported from subtidal zone of Persian Gulf and Gulf of Oman coasts. The present study considers assessment of genetic diversity of 10 populations of 3 species of Hypnea by using 6 ISSR primers. Genetic diversity parameters were determined among populations. The genetic divergence of the studied populations was checked by Neighbor Joining (NJ) and Principal component analysis (PCA). Genetic differentiation of the studied species and populations was studied by AMOVA (Analysis of molecular variance) test. The Mantel test was performed to study association between molecular distance and geographical distance of the studied populations. Grouping of the populations by NJ clustering separated the studied species in 2 distinct clusters. The most populations of H. musciformis formed a separate cluster and were placed far from the other species. H. ecklonii and H. cornuta showed some degree of relationship and were placed close to each other. AMOVA test showed significant genetic difference among populations. The Mantel test did not show correlation between the genetic distance and geographical distance of these populations. | ||
| کلیدواژهها | ||
| ISSR؛ southern coasts؛ Mantel test؛ genetic diversity؛ Hypnea | ||
| مراجع | ||
|
Abbot, I. A. (1995). Taxonomy of economic seaweeds. A Publication of the California Sea Grant Collage System, Vol: 5.
Abbot, I. A. & Hollenberg, G. J. (1976). Marine algae of California. Stanford University Press, California.
Agardh, J. G. (1852). Algas florideas complectens. Part 2. In species genera etordinesalgarum. Vol 2.Gleerup. Lund.
Freeland, J. R., Kirk, H. & Peterson, S. D. (2011). Molecular Ecology. Wiley-Blackwell, UK.
Freshwater, D. W., Fredericq, S., Butler, B. S., Hommersand, M. H. & Chase, M. W. (1994). A gene phylogeny of the red algae (Rhodophyta) based on plastid rbcL. Proceeding of the National Academy of Science, 91, 7281-7285.
Gharanjik, B. M. & Rohani Ghadikolai, k. 2009: Atlas of sea algae from Persian Gulf and Oman sea coasts. Fisheries research publication. (In Persian)
Guiry M. D. & al. (2006). Algae Base version 4.1 World-wide Web electronic publication. National University of Ireland, Galway. http://www.algaebase.org. Geraldino, P. J. L., Riosmena-Rodriguez, R., Lio, L.M. & Boo, S. M. (2010). Phylogenetic relationships within the genus Hypnea (Rodophyta, Gigartinales), with a description of H. caespitosa so. Nov. Journal of Phycology, 46, 3336-345. Geraldino, P.J.L., Yang E.C. & Boo S.M. (2006). Morphology and molecular phylogeny of H. flexicaulis (Gigartinales, Rhodophyta) from Korea. Algae, 21, 417-423. Hamer, O., Harper, D.A.T, Ryan, P.D. (2012). PAST: Paleontological Statistics software package for education and data analysis. Paleontology. Electronica, 4: 9.
Hewitt, F. E. (1960). A morphological study of three South African Gigartinales. University of California Publication, 32, 195-223.
Holsinger, K. E. & Lewis, P. O. (2003). Hickory: a package for analysis of population genetic data v 1·0. University of Connecticut, Storrs: Distributed by the authors; Version 1.0.4 available for download at http://darwin.eeb.uconn.edu/hickory/hickory.html
John, D.M., & Al-Thani, R.F. (2014). Benthic marine algae of the Arabian Gulf: a critical review and analysis of distribution and diversity patterns, Nova Hedwigia, 98, 341–392.
Krizman, M., Baricevic, D. & Prosek, M. (2006). Fast quantitative determination of volatile constituents in fennel by headspace gas chromatography. Analytica Chimica Acta, 557, 267–271.
Masuda, M., Yamagishi, Y., Chiang, Y.M., Lewmanomont, K. & Xia, B. (1997). Overview of Hypnea (Rhodophyta, Hypneaceae). Pp. 127–133 in: Abbott, I.A. (ed.), Taxonomy of Economic Seaweeds, vol. 6. California Sea Grant College System, La Jolla.
Mshigeni, K. E. & Chapman, D.J. (1994). Hypnea (Gigartinales, Rhodophyta) In: (I. Katsuka. Ed.) Biology of economic Algae. SPB Academic publishing bv, The Hague.
Mshigeni, K. E. (1978). The biology and ecology of benthic marine algae with special reference to Hypnea (Rodophyta, Gigartinales). A review of literature. Bibliography of Phycology, 37, 1-168.
Peakall, R. & Smouse, P.E. (2006). GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288–295.
Podani, j. (2000). Introduction to exploration multivariate biological data. Backhuys publisher, Leiden.
Robba, L., Russell, S.J., Barker, G.L., Brodie, and J. (2006). Assessing the use of the mitochondrial cox1 marker for use in DNA barcoding of red algae (Rhodophyta). American Journal of Botany, 93, 1101-1108.
Rodrigues, N. (2011). Diversity of Genus Hypnea (Gigartinales, Rhodophyta) in the State of Sao Paulo-based on Molecular Markers and Morphology. Master of Science thesis, Institute Biosciences of the University of Ersidade Sao paulo.
Sargazi, F. & Riahi H. 2018: Intra–specific diversity in Hypnea species (Rhodophyta: Gigartinales). Iranian Journal of Botany, 24(1): 72–83.
Saunders, G.W. (2005). Applying DNA barcoding to red macro algae: a preliminary appraisal holds promise for future applications. Philosophical Transaction of the Royal Society, 360: 1879-1888.
Weising, K., Nybom, H., Wolff, K. & Kahl, G. (2005). DNA Fingerprinting in Plants. Principles, Methods, and Applications. Taylor and Francis publication.
Zietkiewicz, E., Rafalski, A. & Labuda, D. (1994). Genome fingerprinting by simple sequence repeat (SSR) anchored polymerase chain reaction amplification. Genetic, 20,176–183. | ||
|
آمار تعداد مشاهده مقاله: 1,351 تعداد دریافت فایل اصل مقاله: 666 |
||